DRETools: A tool-suite for differential RNA editing detection

A Tool Suite for Multi-paradigm Specification

In this paper, we present a tool suite developed to facilitate the use of a multi-paradigm specification technique. By adopting such a technique, different aspects (or components) of a system can be specified using different formal languages. Using FC2 as our common file format, we can load in different (partial) specifications, compose them and then view the result in textual or graphical form...

A Tool Suite for Evolving Legacy Software

Evolving an existing software system is fundamentally different from developing one from scratch. Consequently, tools to support evolution must go beyond traditional development tools. This paper describes the Esprit de Corps Suite (EDCS) of software evolution tools. EDCS supports the Mission Oriented Architectural Legacy Evolution (MORALE) software reengineering process. The paper briefly desc...

GeoSOM Suite: A Tool for Spatial Clustering

The large amount of spatial data available today demands the use of data mining tools for its analysis. One of the most used data mining techniques is clustering. Several methods for spatial clustering exist, but many consider space as just another variable. We present in this paper a tool particularly suited for spatial clustering: the GeoSOM suite. This tool implements the GeoSOM algorithm, w...

MIRIAD: a tool suite for MCDA

YeATS - a tool suite for analyzing RNA - seq derived transcriptome identifies a highly transcribed

The transcriptome provides a functional footprint of the genome by enumerating the molecular components of cells and tissues. The field of transcript discovery has been revolutionized through high-throughput mRNA sequencing (RNA-seq). Here, we present a methodology that replicates and improves existing methodologies, and implements a workflow for error estimation and correction followed by geno...